Hacks - Legend of Zelda: Phantom Hourglass
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The switches in the Ghost Ship are a bit confusing... However, the order it says is not the order that you should pull it. Instead, say that the numbers are above the switches, like so:
2 4 5 1 3
- - - - -
1 2 3 4 5
So, the switch you'd pull first is the 4th one, then the first one, then the last one, then the second one, and finally the middle one.
Sorry if this is confusing... If it is, then look at the guide by Dark_Link_13 on GameFAQs.